2. Giovanni Takes A Lot Of "Vacations"

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As we all now know, Giovanni was the head of Team Rocket.  He was also the Gym Leader in Viridian as a cover.  Before he was unmasked as the head of Rocket though, whenever you would go to the Viridian Gym guard, the guard would tell you that the gym leader is out of town.  Didn't anyone put two and two together that Giovanni was leaving town the same days that Team Rocket would strike?  No one at the gym ever asked him, "Boss, you leave a lot and when you do...you're not...you know...in Team Rocket or anything, right?"